Information
The Phenopacket v2 schema enforces the presence of specific properties to achieve successful validation. We display in parenthesis the fields that are employed to guarantee conformity.
Version 0.25
Terms
id
BFF JSON path
PXF JSON path
(UNIQUE ID)
id
subject
BFF JSON path
PXF JSON path
id
subject.id
(ALIVE)
subject.vitalStatus
sex.label
subject.sex
info.dateOfBirth
subject.dateOfBirth
karyotypicSex
subject.karyotypicSex
phenotypicFeatures
BFF JSON path
PXF JSON path
phenotypicFeatures.featureType
phenotypicFeatures.type
phenotypicFeatures.excluded
phenotypicFeatures.excluded
measurements
BFF JSON path
PXF JSON path
measures.assayCode
measurements.assay
measures.measurementValue
measurements.value
measures.measurementValue.typedQuantities.quantityType
measurements.complexValue.typedQuantities.type
biosamples
BFF JSON path
PXF JSON path
info.biosamples
biosamples
interpretations
BFF JSON path
PXF JSON path
info.interpretations
interpretations
diseases
BFF JSON path
PXF JSON path
diseases.diseaseCode
diseases.term
diseases.ageOfOnset
diseases.onset
medicalActions
BFF JSON path
PXF JSON path
interventionsOrProcedures.procedureCode
medicalActions.procedure.code
interventionsOrProcedures.ageAtProcedure
medicalActions.procedure.performed
treatments.treatmentCode
medicalActions.treatment.agent
files
NA
BFF JSON path
PXF JSON path
info.metaData
metaData
exposures (not-listed in PXF documentation)
BFF JSON path
PXF JSON path
exposures.exposureCode
exposures.type
exposures.date
exposures.occurrence.timestamp
last change 2023-03-09 by Manuel Rueda