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As a command-line interface

Convert-Pheno software includes a command-line utility, which is particularly useful when working with text files, such as those exported from PostgreSQL, as input.

Usage

The operation is simple:

$ convert-pheno -input-format <filein> -output-format <fileout>
Google Colab tutorial

We created a Google Colab tutorial notebook to enable testing Convert-Phenoin a virtual environment. Users can view notebooks shared publicly without sign-in, but you need a google account to execute code.

Open In Colab

Please see more examples in this README.

Inspiration

The command line operation was inspired by convert tool from ImageMagick and from OpenBabel.