CBIcall

Configuration-driven variant calling

Validate one analysis request against controlled workflow and resource contracts, execute it through supported backends, and retain structured evidence for audit and run comparison.

Quick start Overview

Analysis request

mode: single
pipeline: wes
workflow_backend: nextflow
software_stack: gatk-4.6
genome: b37

Workflowresolved

Resourcesverified

Auditenabled

Paired-end FASTQ reads aligned into a BAM pileup and reported as a filtered VCF

FASTQPaired-end reads

BAMAligned read evidence

VCFFiltered variant calls

From paired-end sequencing reads to filtered VCFs with structured audit evidence.

Get started

Install and run

Install from PyPI, Docker, or Apptainer and execute the shipped WES test.

Analyses

Select a pipeline

Review the native WES, WGS, and mtDNA workflows for single-sample and cohort analysis.

Reproducibility

Audit independent runs

Compare workflow identity, resources, runtime evidence, and final-output fingerprints.

Developers

CBIcall

Install and run

Select a pipeline

Audit independent runs

Add an implementation