Pheno-Ranker
Phenotypic similarity analysis for cohorts and patient matching.
Rank patients, compare cohorts, export similarity matrices, and explore phenotypic relationships from Beacon v2 Models, Phenopackets, CSV, and generic JSON data with the pheno-ranker command-line workflow.
Pheno-RankerCohort Mode
Compute pairwise distances, similarity matrices, graph exports, and dimensionality-reduction inputs.
MatchPatient Mode
Rank one or more patients against reference cohorts with interpretable overlap and completeness statistics.
MethodAlgorithm
Understand canonicalization, term weighting, filtering, and distance calculations.
Flexible InputGeneric JSON
Use Pheno-Ranker beyond BFF and PXF when your data can be represented as structured JSON.
R WorkflowsUse from R
Call the CLI from R, then read matrices, rankings, exported JSON, or sparse Matrix Market output.
UtilitiesQR and PDF
Encode patient-level data into QR codes or PDF summaries for compact exchange workflows.