Implementation

Components

The core of Pheno-Ranker is a Perl module, accessible through a command-line interface.

A Web App UI enhances its functionality, built with R-Shiny.

Diagram showing Pheno-Ranker implementation

Which one should I use?

• For a quick and practical start, try the Pheno-Ranker Web App UI. It's an intuitive, browser-based interface for straightforward usage.
• For advanced features, explore the Command-Line Interface (CLI), which offers greater control and flexibility.

Utilities

Pheno-Ranker includes several companion command-line utilities:

1. bff-pxf-plot: a CLI tool to create summary statistics for BFF/PXF data.
2. bff-pxf-simulator: a CLI tool to simulate BFF/PXF data.
3. csv2pheno-ranker: a CLI tool to convert CSV into Pheno-Ranker input files.
4. QR encoder/decoder: CLI tools to transform data back and forth into QR codes and PDF reports.