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Implementation

Components​

The core of Pheno-Ranker is a Perl module, accessible through a command-line interface.

A Web App UI, built with R-Shiny, is a legacy interface that will be supported until 2027. The CLI is recommended for new workflows.

Diagram showing Pheno-Ranker implementation
Which interface should I use?

Use the Command-Line Interface (CLI) for new workflows. The legacy Web App UI remains supported until 2027 for existing workflows.

Utilities​

Pheno-Ranker includes several companion command-line utilities:

  1. bff-pxf-plot: a CLI tool to create summary statistics for BFF/PXF data.
  2. bff-pxf-simulator: a CLI tool to simulate BFF/PXF data.
  3. csv2pheno-ranker: a CLI tool to convert CSV into Pheno-Ranker input files.
  4. QR encoder/decoder: CLI tools to transform data back and forth into QR codes and PDF reports.