BFF-PXF-PLOT

Explanation

bff-pxf-plot is a companion command-line utility for plotting basic statistics from BFF or PXF formats.

The tool, bff-pxf-plot, is found in the utils directory (if downloaded from GitHub or Docker).

BFF plots

Beacon Friendly Format plots

PXF plots

Phenotype Exchange Format

Usage

View source README

HOW TO RUN

usage: bff-pxf-plot [-h] -i INPUT [-o OUTPUT] [-v]

Process BFF/PXF (JSON or YAML) data and generate plots in a PNG file.

options:
  -h, --help            show this help message and exit
  -i INPUT, --input INPUT
                        Input JSON or YAML file path (e.g., "data.json" or "data.yaml").
  -o OUTPUT, --output OUTPUT
                        Optional: Output PNG file path (default: "output_plots.png")
  -v, --verbose         Increase output verbosity

Example:

./bff-pxf-plot -i individuals.json

INSTALLATION

It should work out of the box with the containerized version. Otherwise:

pip install pandas matplotlib PyYAML

AUTHOR

Written by Manuel Rueda, PhD. Info about CNAG can be found at https://www.cnag.eu.

COPYRIGHT AND LICENSE

This Python file is copyrighted. See the LICENSE file included in this distribution.