CBIcall

A configuration-driven workflow dispatcher for reproducible WES, WGS, and mtDNA variant-calling runs.

InputFASTQ; existing BAMs for mtDNA

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DispatcherWES · WGS · mtDNA

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OutputBAM · VCF · QC · HTML

bashsnakemakeGATKMToolBox

Install

Docker, Apptainer, and non-containerized setup paths.

Single-sample and cohort workflows for WES, WGS, and mtDNA.

Standard project layout, logs, QC files, and generated outputs.

Registry-driven workflow wiring for adding new pipelines.