CBIcall
CBIcall is a configuration-driven framework for reproducible variant calling in large sequencing cohorts.
ParametersValidated YAML analysis contract
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Workflow backendsBash · Snakemake · Nextflow · Cromwell
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AuditRun reports · hashes · comparisons
validationresourcesprovenancereportsnf-core
Setup
Install
Docker, Apptainer, and non-containerized setup paths.
PipelinesIncluded Analyses
Curated WES, WGS, and mtDNA workflows for single-sample and cohort use.
ReproducibilityAudit Runs
Structured reports, workflow fingerprints, resource hashes, and run comparison.
DevelopersExtend
Registry-driven workflow wiring for adding new pipelines.